IL_8G61_335

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_335 not in the Motif Atlas

Homologous match to IL_8P9A_419

Geometric discrepancy: 0.0939

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8G61|1|S2|G|928
8G61|1|S2|G|929
8G61|1|S2|C|930
8G61|1|S2|C|931
*
8G61|1|S2|G|1010
8G61|1|S2|A|1011
8G61|1|S2|A|1012
8G61|1|S2|U|1013

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27