IL_8G6J_041

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8G6J|1|L5|G|748, 8G6J|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_041 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1708

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8G6J|1|L5|G|745
8G6J|1|L5|A|746
8G6J|1|L5|A|747
8G6J|1|L5|G|748
8G6J|1|L5|G|749
8G6J|1|L5|U|750
8G6J|1|L5|G|751
8G6J|1|L5|G|752
*
8G6J|1|L5|U|911
8G6J|1|L5|G|912
8G6J|1|L5|U|913
8G6J|1|L5|U|914
8G6J|1|L5|A|915
8G6J|1|L5|C|916
8G6J|1|L5|A|917
8G6J|1|L5|G|918
8G6J|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a