IL_8G6J_082

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8G6J|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_082 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.1222

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8G6J|1|L5|U|1957
8G6J|1|L5|A|1958
8G6J|1|L5|U|1959
8G6J|1|L5|A|1960
8G6J|1|L5|G|1961
8G6J|1|L5|A|1962
8G6J|1|L5|C|1963
8G6J|1|L5|A|1964
8G6J|1|L5|G|1965
*
8G6J|1|L5|C|2022
8G6J|1|L5|C|2023
8G6J|1|L5|G|2024
8G6J|1|L5|A|2025
8G6J|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

eL40

Chain Lq

60S acidic ribosomal protein P0