IL_8G6J_329

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCACUC*GGA(OMG)

Length

10 nucleotides

Bulged bases

8G6J|1|S2|G|507

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_329 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.1175

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8G6J|1|S2|C|491
8G6J|1|S2|C|492
8G6J|1|S2|A|493
8G6J|1|S2|C|494
8G6J|1|S2|U|495
8G6J|1|S2|C|496
*
8G6J|1|S2|G|506
8G6J|1|S2|G|507
8G6J|1|S2|A|508
8G6J|1|S2|OMG|509

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24