3D structure

PDB id
8G6W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.02 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
8G6W|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G6W_034 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.0985
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

8G6W|1|A|U|684
8G6W|1|A|G|685
8G6W|1|A|U|686
8G6W|1|A|A|687
8G6W|1|A|G|688
*
8G6W|1|A|C|699
8G6W|1|A|G|700
8G6W|1|A|U|701
8G6W|1|A|A|702
8G6W|1|A|G|703
8G6W|1|A|A|704
8G6W|1|A|G|705
8G6W|1|A|A|706

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
30S ribosomal protein S11
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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