IL_8G6X_036

3D structure

PDB id

8G6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.31 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8G6X|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6X_036 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0401

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8G6X|1|a|U|1018
8G6X|1|a|U|1019
8G6X|1|a|A|1020
8G6X|1|a|A|1021
8G6X|1|a|G|1022
8G6X|1|a|U|1023
8G6X|1|a|G|1024
*
8G6X|1|a|C|1140
8G6X|1|a|U|1141
8G6X|1|a|A|1142
8G6X|1|a|A|1143
8G6X|1|a|A|1144

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13