3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
8G6Y|1|a|A|1801, 8G6Y|1|a|C|1816, 8G6Y|1|a|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G6Y_068 not in the Motif Atlas
Homologous match to IL_5J7L_313
Geometric discrepancy: 0.0447
The information below is about IL_5J7L_313
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

8G6Y|1|a|U|1798
8G6Y|1|a|G|1799
8G6Y|1|a|C|1800
8G6Y|1|a|A|1801
8G6Y|1|a|A|1802
8G6Y|1|a|A|1803
8G6Y|1|a|C|1804
*
8G6Y|1|a|G|1813
8G6Y|1|a|G|1814
8G6Y|1|a|A|1815
8G6Y|1|a|C|1816
8G6Y|1|a|G|1817
8G6Y|1|a|U|1818
8G6Y|1|a|A|1819
8G6Y|1|a|U|1820
8G6Y|1|a|A|1821

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L2

Coloring options:


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