IL_8G6Y_096

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8G6Y|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_096 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0574

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8G6Y|1|a|C|2636
8G6Y|1|a|U|2637
8G6Y|1|a|G|2638
8G6Y|1|a|A|2639
8G6Y|1|a|G|2640
*
8G6Y|1|a|C|2774
8G6Y|1|a|G|2775
8G6Y|1|a|A|2776
8G6Y|1|a|G|2777
8G6Y|1|a|A|2778
8G6Y|1|a|U|2779
8G6Y|1|a|G|2780
8G6Y|1|a|A|2781
8G6Y|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13