IL_8G7Q_068

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8G7Q|1|A|A|1801, 8G7Q|1|A|C|1816, 8G7Q|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7Q_068 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.113

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8G7Q|1|A|U|1798
8G7Q|1|A|G|1799
8G7Q|1|A|C|1800
8G7Q|1|A|A|1801
8G7Q|1|A|A|1802
8G7Q|1|A|A|1803
8G7Q|1|A|C|1804
*
8G7Q|1|A|G|1813
8G7Q|1|A|G|1814
8G7Q|1|A|A|1815
8G7Q|1|A|C|1816
8G7Q|1|A|G|1817
8G7Q|1|A|U|1818
8G7Q|1|A|A|1819
8G7Q|1|A|U|1820
8G7Q|1|A|A|1821

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA