IL_8G7S_035

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8G7S|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7S_035 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0923

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8G7S|1|A|U|1018
8G7S|1|A|U|1019
8G7S|1|A|A|1020
8G7S|1|A|A|1021
8G7S|1|A|G|1022
8G7S|1|A|U|1023
8G7S|1|A|G|1024
*
8G7S|1|A|C|1140
8G7S|1|A|U|1141
8G7S|1|A|A|1142
8G7S|1|A|A|1143
8G7S|1|A|A|1144

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain L

50S ribosomal protein L13