IL_8G7S_069

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8G7S|1|A|A|1801, 8G7S|1|A|C|1816, 8G7S|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7S_069 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0986

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8G7S|1|A|U|1798
8G7S|1|A|G|1799
8G7S|1|A|C|1800
8G7S|1|A|A|1801
8G7S|1|A|A|1802
8G7S|1|A|A|1803
8G7S|1|A|C|1804
*
8G7S|1|A|G|1813
8G7S|1|A|G|1814
8G7S|1|A|A|1815
8G7S|1|A|C|1816
8G7S|1|A|G|1817
8G7S|1|A|U|1818
8G7S|1|A|A|1819
8G7S|1|A|U|1820
8G7S|1|A|A|1821

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA