IL_8G7S_175

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

8G7S|1|a|A|1257, 8G7S|1|a|A|1280, 8G7S|1|a|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7S_175 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.4218

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8G7S|1|a|G|1255
8G7S|1|a|A|1256
8G7S|1|a|A|1257
8G7S|1|a|G|1258
*
8G7S|1|a|C|1277
8G7S|1|a|G|1278
8G7S|1|a|G|1279
8G7S|1|a|A|1280
8G7S|1|a|C|1281
8G7S|1|a|C|1282

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14