IL_8GHU_020
3D structure
- PDB id
- 8GHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methyltransferase RmtC bound to the 30S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACGCAGG*CUCAGGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8GHU_020 not in the Motif Atlas
- Geometric match to IL_3KTW_004
- Geometric discrepancy: 0.3229
- The information below is about IL_3KTW_004
- Detailed Annotation
- tSH-tHW-tHS with extra cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_65851.3
- Basepair signature
- cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L
- Number of instances in this motif group
- 2
Unit IDs
8GHU|1|a|A|579
8GHU|1|a|C|580
8GHU|1|a|G|581
8GHU|1|a|C|582
8GHU|1|a|A|583
8GHU|1|a|G|584
8GHU|1|a|G|585
*
8GHU|1|a|C|756
8GHU|1|a|U|757
8GHU|1|a|C|758
8GHU|1|a|A|759
8GHU|1|a|G|760
8GHU|1|a|G|761
8GHU|1|a|U|762
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
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