IL_8GHU_026

3D structure

PDB id

8GHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methyltransferase RmtC bound to the 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GHU_026 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.218

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8GHU|1|a|C|779
8GHU|1|a|A|780
8GHU|1|a|A|781
8GHU|1|a|A|782
8GHU|1|a|C|783
*
8GHU|1|a|G|799
8GHU|1|a|G|800
8GHU|1|a|U|801
8GHU|1|a|A|802
8GHU|1|a|G|803

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

16S rRNA (guanine(1405)-N(7))-methyltransferase