IL_8GHU_027
3D structure
- PDB id
- 8GHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methyltransferase RmtC bound to the 30S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- 8GHU|1|a|G|890
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8GHU_027 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.2171
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8GHU|1|a|G|887
8GHU|1|a|G|888
8GHU|1|a|A|889
8GHU|1|a|G|890
8GHU|1|a|U|891
8GHU|1|a|A|892
8GHU|1|a|C|893
8GHU|1|a|G|894
*
8GHU|1|a|U|905
8GHU|1|a|A|906
8GHU|1|a|A|907
8GHU|1|a|A|908
8GHU|1|a|A|909
8GHU|1|a|C|910
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- 16S rRNA (guanine(1405)-N(7))-methyltransferase
- Chain l
- 30S ribosomal protein S12
Coloring options: