IL_8GHU_034

3D structure

PDB id

8GHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methyltransferase RmtC bound to the 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGG*CCAU

Length

7 nucleotides

Bulged bases

8GHU|1|a|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GHU_034 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2428

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8GHU|1|a|A|44
8GHU|1|a|G|45
8GHU|1|a|G|46
*
8GHU|1|a|C|395
8GHU|1|a|C|396
8GHU|1|a|A|397
8GHU|1|a|U|398

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16