IL_8GLP_131

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8GLP|1|L5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_131 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.055

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8GLP|1|L5|G|3916
8GLP|1|L5|A|3917
*
8GLP|1|L5|U|4384
8GLP|1|L5|A|4385
8GLP|1|L5|C|4386
8GLP|1|L5|C|4387

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8 (uL2)

Chain LN

60S ribosomal protein L15

Chain Pt

Transfer RNA; tRNA