IL_8GLP_216

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

8GLP|1|S2|A|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_216 not in the Motif Atlas

Homologous match to IL_4V88_409

Geometric discrepancy: 0.421

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8GLP|1|S2|U|530
8GLP|1|S2|A|531
*
8GLP|1|S2|U|553
8GLP|1|S2|A|554
8GLP|1|S2|A|555

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

FAU ubiquitin-like and ribosomal protein S30