3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
CGCU*AAAAG
Length
9 nucleotides
Bulged bases
8GLP|1|S2|A|1825
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8GLP_277 not in the Motif Atlas
Geometric match to IL_3WBM_002
Geometric discrepancy: 0.2986
The information below is about IL_3WBM_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8GLP|1|S2|C|1708
8GLP|1|S2|G|1709
8GLP|1|S2|C|1710
8GLP|1|S2|U|1711
*
8GLP|1|S2|A|1822
8GLP|1|S2|A|1823
8GLP|1|S2|A|1824
8GLP|1|S2|A|1825
8GLP|1|S2|G|1826

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L41
Chain SX
40S ribosomal protein S23 (uS12)

Coloring options:


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