IL_8GLP_283
3D structure
- PDB id
- 8GLP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- CCU*ACG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8GLP_283 not in the Motif Atlas
- Geometric match to IL_1UN6_005
- Geometric discrepancy: 0.0911
- The information below is about IL_1UN6_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8GLP|1|S2|C|1739
8GLP|1|S2|C|1740
8GLP|1|S2|U|1741
*
8GLP|1|S2|A|1793
8GLP|1|S2|C|1794
8GLP|1|S2|G|1795
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
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