IL_8GLP_296

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GUCUU*AAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_296 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.2922

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46387.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8GLP|1|L5|G|1753
8GLP|1|L5|U|1754
8GLP|1|L5|C|1755
8GLP|1|L5|U|1756
8GLP|1|L5|U|1757
*
8GLP|1|L5|A|1775
8GLP|1|L5|A|1776
8GLP|1|L5|C|1777

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10