IL_8GLP_306

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_306 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.2789

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8GLP|1|L5|PSU|3715
8GLP|1|L5|C|3716
8GLP|1|L5|A|3717
8GLP|1|L5|A2M|3718
8GLP|1|L5|A|3719
8GLP|1|L5|G|3720
8GLP|1|L5|U|3721
*
8GLP|1|L5|A|3732
8GLP|1|L5|A|3733
8GLP|1|L5|PSU|3734
8GLP|1|L5|G|3735
8GLP|1|L5|A|3736
8GLP|1|L5|A|3737
8GLP|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8 (uL2)

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a