IL_8HFR_001

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8HFR|1|3n|C|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_001 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.095

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8HFR|1|1e|C|7
8HFR|1|1e|C|8
*
8HFR|1|3n|G|150
8HFR|1|3n|C|151
8HFR|1|3n|G|152

Current chains

Chain 1e

25S ribosomal RNA

Chain 3n

5.8S ribosomal RNA

Nearby chains

Chain Hj

60S ribosomal protein L8-A

Chain No

60S ribosomal protein L15-A

Chain Xc

60S ribosomal protein L25