IL_8HFR_030
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_030 not in the Motif Atlas
- Geometric match to IL_5J7L_263
- Geometric discrepancy: 0.088
- The information below is about IL_5J7L_263
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8HFR|1|1e|U|834
8HFR|1|1e|G|835
8HFR|1|1e|A|836
8HFR|1|1e|A|837
8HFR|1|1e|G|838
*
8HFR|1|1e|U|855
8HFR|1|1e|G|856
8HFR|1|1e|G|857
8HFR|1|1e|A|858
8HFR|1|1e|G|859
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain B4
- 60S ribosomal protein L2-A
- Chain RP
- 60S ribosomal protein L19-A
- Chain nY
- 60S ribosomal protein L43-A
- Chain xI
- Shuttling pre-60S factor ECM1
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