IL_8HFR_048
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8HFR|1|1e|C|1196, 8HFR|1|1e|C|1201, 8HFR|1|1e|A|1202
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_048 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.3882
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8HFR|1|1e|G|1194
8HFR|1|1e|A|1195
8HFR|1|1e|C|1196
8HFR|1|1e|A|1197
8HFR|1|1e|C|1198
8HFR|1|1e|C|1199
8HFR|1|1e|A|1200
8HFR|1|1e|C|1201
8HFR|1|1e|A|1202
8HFR|1|1e|A|1203
8HFR|1|1e|A|1204
8HFR|1|1e|A|1205
*
8HFR|1|1e|U|1299
8HFR|1|1e|G|1300
8HFR|1|1e|A|1301
8HFR|1|1e|A|1302
8HFR|1|1e|A|1303
8HFR|1|1e|A|1304
8HFR|1|1e|U|1305
8HFR|1|1e|G|1306
8HFR|1|1e|G|1307
8HFR|1|1e|A|1308
8HFR|1|1e|U|1309
8HFR|1|1e|G|1310
8HFR|1|1e|G|1311
8HFR|1|1e|C|1312
8HFR|1|1e|G|1313
8HFR|1|1e|C|1314
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain 2f
- 5S ribosomal RNA; 5S rRNA
- Chain CD
- 60S ribosomal protein L3
- Chain Gu
- 60S ribosomal protein L7-A
- Chain O6
- 60S ribosomal protein L16-A
- Chain SZ
- 60S ribosomal protein L20-A
- Chain f7
- 60S ribosomal protein L33-A
- Chain rA
- Nucleolar GTP-binding protein 1
- Chain xd
- Ribosome biogenesis protein NSA2
Coloring options: