IL_8HFR_053

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8HFR|1|1e|G|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_053 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.0735

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

8HFR|1|1e|C|1376
8HFR|1|1e|G|1377
8HFR|1|1e|U|1378
*
8HFR|1|1e|A|1428
8HFR|1|1e|G|1429
8HFR|1|1e|U|1430
8HFR|1|1e|G|1431

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain 3n

5.8S ribosomal RNA; 5.8S rRNA

Chain DO

60S ribosomal protein L4-A

Chain aw

60S ribosomal protein L28

Chain eH

60S ribosomal protein L32