IL_8HFR_061

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_061 not in the Motif Atlas

Homologous match to IL_8C3A_070

Geometric discrepancy: 0.1272

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8HFR|1|1e|G|1618
8HFR|1|1e|A|1619
8HFR|1|1e|U|1620
8HFR|1|1e|A|1621
*
8HFR|1|1e|U|1824
8HFR|1|1e|G|1825
8HFR|1|1e|C|1826

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain 3n

5.8S ribosomal RNA; 5.8S rRNA

Chain EX

mRNA export factor MEX67

Chain kr

60S ribosomal protein L38