IL_8HFR_086

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_086 not in the Motif Atlas

Homologous match to IL_5TBW_087

Geometric discrepancy: 0.3225

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8HFR|1|1e|G|2206
8HFR|1|1e|A|2207
8HFR|1|1e|A|2208
8HFR|1|1e|U|2209
8HFR|1|1e|G|2210
*
8HFR|1|1e|C|2235
8HFR|1|1e|G|2236
8HFR|1|1e|C|2237

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain vV

60S ribosomal export protein NMD3

Chain xI

Shuttling pre-60S factor ECM1