IL_8HFR_087
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_087 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1267
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8HFR|1|1e|U|2211
8HFR|1|1e|C|2212
8HFR|1|1e|A|2213
8HFR|1|1e|A|2214
8HFR|1|1e|A|2215
8HFR|1|1e|G|2216
8HFR|1|1e|U|2217
*
8HFR|1|1e|A|2228
8HFR|1|1e|A|2229
8HFR|1|1e|C|2230
8HFR|1|1e|C|2231
8HFR|1|1e|A|2232
8HFR|1|1e|A|2233
8HFR|1|1e|G|2234
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain As
- YEAST 60S ribosomal protein L1-A
- Chain ia
- 60S ribosomal protein L36-A
- Chain vV
- 60S ribosomal export protein NMD3
- Chain xI
- Shuttling pre-60S factor ECM1
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