IL_8HFR_093

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GACA*UAGUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_093 not in the Motif Atlas

Homologous match to IL_8C3A_102

Geometric discrepancy: 0.4918

The information below is about IL_8C3A_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8HFR|1|1e|G|2442
8HFR|1|1e|A|2443
8HFR|1|1e|C|2444
8HFR|1|1e|A|2445
*
8HFR|1|1e|U|2501
8HFR|1|1e|A|2502
8HFR|1|1e|G|2503
8HFR|1|1e|U|2504
8HFR|1|1e|U|2505

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain ia

60S ribosomal protein L36-A