IL_8HFR_108
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 8HFR|1|1e|A|3142, 8HFR|1|1e|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_108 not in the Motif Atlas
- Homologous match to IL_5TBW_114
- Geometric discrepancy: 0.1048
- The information below is about IL_5TBW_114
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8HFR|1|1e|C|3004
8HFR|1|1e|A|3005
8HFR|1|1e|A|3006
8HFR|1|1e|U|3007
*
8HFR|1|1e|A|3139
8HFR|1|1e|G|3140
8HFR|1|1e|A|3141
8HFR|1|1e|A|3142
8HFR|1|1e|C|3143
8HFR|1|1e|G|3144
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L3
- Chain O6
- 60S ribosomal protein L16-A
- Chain qJ
- Ribosome biogenesis protein ALB1
- Chain zp
- UPF0642 protein YBL028C
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