IL_8HFR_115

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_115 not in the Motif Atlas

Homologous match to IL_5TBW_121

Geometric discrepancy: 0.4784

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8HFR|1|1e|C|3162
8HFR|1|1e|A|3163
8HFR|1|1e|C|3164
8HFR|1|1e|A|3165
8HFR|1|1e|C|3166
*
8HFR|1|1e|G|3284
8HFR|1|1e|C|3285
8HFR|1|1e|G|3286
8HFR|1|1e|U|3287
8HFR|1|1e|G|3288

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain qJ

Ribosome biogenesis protein ALB1

Chain zp

UPF0642 protein YBL028C