IL_8HFR_119

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

8HFR|1|1e|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_119 not in the Motif Atlas

Homologous match to IL_5TBW_126

Geometric discrepancy: 0.1575

The information below is about IL_5TBW_126

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8HFR|1|1e|C|3225
8HFR|1|1e|A|3226
8HFR|1|1e|A|3227
8HFR|1|1e|C|3228
8HFR|1|1e|G|3229
*
8HFR|1|1e|U|3258
8HFR|1|1e|U|3259
8HFR|1|1e|G|3260

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain F8

60S ribosomal protein L6-A

Chain MQ

60S ribosomal protein L14-A

Chain O6

60S ribosomal protein L16-A