IL_8HFR_125

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

8HFR|1|1e|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_125 not in the Motif Atlas

Homologous match to IL_5TBW_133

Geometric discrepancy: 0.1099

The information below is about IL_5TBW_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

8HFR|1|1e|U|3332
8HFR|1|1e|G|3333
8HFR|1|1e|U|3334
8HFR|1|1e|A|3335
8HFR|1|1e|A|3336
8HFR|1|1e|G|3337
*
8HFR|1|1e|C|3367
8HFR|1|1e|U|3368
8HFR|1|1e|G|3369
8HFR|1|1e|A|3370
8HFR|1|1e|G|3371

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L3

Chain rA

Nucleolar GTP-binding protein 1

Chain tB

Ribosome biogenesis protein RLP24