IL_8HFR_136
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_136 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0705
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
8HFR|1|3n|A|44
8HFR|1|3n|C|45
8HFR|1|3n|G|46
8HFR|1|3n|C|47
8HFR|1|3n|A|48
8HFR|1|3n|G|49
8HFR|1|3n|C|50
8HFR|1|3n|G|51
8HFR|1|3n|A|52
8HFR|1|3n|A|53
8HFR|1|3n|A|54
8HFR|1|3n|U|55
8HFR|1|3n|G|56
8HFR|1|3n|C|57
8HFR|1|3n|G|58
8HFR|1|3n|A|59
8HFR|1|3n|U|60
8HFR|1|3n|A|61
8HFR|1|3n|C|62
8HFR|1|3n|G|63
8HFR|1|3n|U|64
*
8HFR|1|3n|A|96
8HFR|1|3n|A|97
8HFR|1|3n|U|98
8HFR|1|3n|C|99
8HFR|1|3n|U|100
Current chains
- Chain 3n
- 5.8S ribosomal RNA
Nearby chains
- Chain 1e
- Large subunit ribosomal RNA; LSU rRNA
- Chain Xc
- 60S ribosomal protein L25
- Chain h1
- 60S ribosomal protein L35-A
- Chain jh
- 60S ribosomal protein L37-A
- Chain li
- 60S ribosomal protein L39
- Chain pT
- Probable metalloprotease ARX1
- Chain rA
- Nucleolar GTP-binding protein 1
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