IL_8HFR_143
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_143 not in the Motif Atlas
- Homologous match to IL_8P9A_305
- Geometric discrepancy: 0.1116
- The information below is about IL_8P9A_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8HFR|1|1e|G|1898
8HFR|1|1e|G|1899
8HFR|1|1e|A|1900
8HFR|1|1e|A|1901
8HFR|1|1e|G|1902
8HFR|1|1e|U|1903
8HFR|1|1e|C|1904
8HFR|1|1e|G|1905
8HFR|1|1e|G|1906
*
8HFR|1|1e|C|2333
8HFR|1|1e|U|2334
8HFR|1|1e|G|2335
8HFR|1|1e|U|2336
8HFR|1|1e|C|2337
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L3
- Chain V5
- 60S ribosomal protein L23-A
- Chain ox
- Bud site selection protein 20
- Chain v9
- Nucleolar GTP-binding protein 2
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