IL_8HL2_064

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_064 not in the Motif Atlas

Homologous match to IL_4V9F_001

Geometric discrepancy: 0.1925

The information below is about IL_4V9F_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.2

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

11

Unit IDs

8HL2|1|A23S|G|15
8HL2|1|A23S|U|16
8HL2|1|A23S|G|17
8HL2|1|A23S|G|18
8HL2|1|A23S|A|19
8HL2|1|A23S|U|20
8HL2|1|A23S|G|21
*
8HL2|1|A23S|C|553
8HL2|1|A23S|U|554
8HL2|1|A23S|G|555
8HL2|1|A23S|A|556
8HL2|1|A23S|A|557
8HL2|1|A23S|A|558
8HL2|1|A23S|C|559

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L22P

50S ribosomal protein L22

Chain L32E

50S ribosomal protein L32e

Chain L46A

Conserved protein