IL_8HL2_068

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUGAG*CGUUGACC

Length

13 nucleotides

Bulged bases

8HL2|1|A23S|U|90

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_068 not in the Motif Atlas

Homologous match to IL_4V9F_004

Geometric discrepancy: 0.2075

The information below is about IL_4V9F_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

8HL2|1|A23S|G|71
8HL2|1|A23S|U|72
8HL2|1|A23S|G|73
8HL2|1|A23S|A|74
8HL2|1|A23S|G|75
*
8HL2|1|A23S|C|87
8HL2|1|A23S|G|88
8HL2|1|A23S|U|89
8HL2|1|A23S|U|90
8HL2|1|A23S|G|91
8HL2|1|A23S|A|92
8HL2|1|A23S|C|93
8HL2|1|A23S|C|94

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L24P

50S ribosomal protein L24

Chain L29P

50S ribosomal protein L29