IL_8HL2_072

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_072 not in the Motif Atlas

Homologous match to IL_4V9F_007

Geometric discrepancy: 0.1746

The information below is about IL_4V9F_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

8HL2|1|A23S|U|218
8HL2|1|A23S|G|219
8HL2|1|A23S|A|220
8HL2|1|A23S|G|221
8HL2|1|A23S|U|222
8HL2|1|A23S|A|223
8HL2|1|A23S|G|224
*
8HL2|1|A23S|C|232
8HL2|1|A23S|G|233
8HL2|1|A23S|A|234
8HL2|1|A23S|A|235
8HL2|1|A23S|A|236
8HL2|1|A23S|G|237

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15P

50S ribosomal protein L15