IL_8HL2_080

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAAAG*CGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_080 not in the Motif Atlas

Geometric match to IL_7ELQ_002

Geometric discrepancy: 0.3982

The information below is about IL_7ELQ_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8HL2|1|A23S|C|584
8HL2|1|A23S|G|585
8HL2|1|A23S|A|586
8HL2|1|A23S|A|587
8HL2|1|A23S|A|588
8HL2|1|A23S|G|589
*
8HL2|1|A23S|C|645
8HL2|1|A23S|G|646
8HL2|1|A23S|G|647

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L32E

50S ribosomal protein L32e

Chain L46A

Conserved protein

Chain L7A2

50S ribosomal protein L7Ae