IL_8HL2_082

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UCC,GGA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_082 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1495

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8HL2|1|A23S|U|601
8HL2|1|A23S|C|602
8HL2|1|A23S|C|603
*
8HL2|1|A23S|G|634
8HL2|1|A23S|G|635
8HL2|1|A23S|A|636

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L32E

50S ribosomal protein L32e