IL_8HL2_083

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_083 not in the Motif Atlas

Geometric match to IL_5J7L_303

Geometric discrepancy: 0.1988

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8HL2|1|A23S|C|603
8HL2|1|A23S|G|604
8HL2|1|A23S|A|605
8HL2|1|A23S|A|606
8HL2|1|A23S|G|607
*
8HL2|1|A23S|C|631
8HL2|1|A23S|G|632
8HL2|1|A23S|A|633
8HL2|1|A23S|G|634

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L30P

50S ribosomal protein L30

Chain L32E

50S ribosomal protein L32e