IL_8HL2_084

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAAAG*UUAGUAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_084 not in the Motif Atlas

Homologous match to IL_4V9F_019

Geometric discrepancy: 0.2032

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8HL2|1|A23S|G|607
8HL2|1|A23S|G|608
8HL2|1|A23S|A|609
8HL2|1|A23S|A|610
8HL2|1|A23S|A|611
8HL2|1|A23S|G|612
*
8HL2|1|A23S|U|625
8HL2|1|A23S|U|626
8HL2|1|A23S|A|627
8HL2|1|A23S|G|628
8HL2|1|A23S|U|629
8HL2|1|A23S|A|630
8HL2|1|A23S|C|631

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L30P

50S ribosomal protein L30