IL_8HL2_087

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8HL2|1|A23S|G|937, 8HL2|1|A23S|G|941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_087 not in the Motif Atlas

Homologous match to IL_4V9F_024

Geometric discrepancy: 0.2549

The information below is about IL_4V9F_024

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

8HL2|1|A23S|G|807
8HL2|1|A23S|A|808
8HL2|1|A23S|A|809
8HL2|1|A23S|A|810
8HL2|1|A23S|C|811
*
8HL2|1|A23S|G|935
8HL2|1|A23S|U|936
8HL2|1|A23S|G|937
8HL2|1|A23S|A|938
8HL2|1|A23S|U|939
8HL2|1|A23S|A|940
8HL2|1|A23S|G|941
8HL2|1|A23S|C|942

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L15E

50S ribosomal protein L15e

Chain L37E

50S ribosomal protein L37e