IL_8HL2_091

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUUC*GUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_091 not in the Motif Atlas

Geometric match to IL_9E6Q_030

Geometric discrepancy: 0.1299

The information below is about IL_9E6Q_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34942.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8HL2|1|A23S|G|873
8HL2|1|A23S|G|874
8HL2|1|A23S|U|875
8HL2|1|A23S|U|876
8HL2|1|A23S|C|877
*
8HL2|1|A23S|G|891
8HL2|1|A23S|U|892
8HL2|1|A23S|U|893
8HL2|1|A23S|C|894

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L37E

50S ribosomal protein L37e