IL_8HL2_098

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_098 not in the Motif Atlas

Homologous match to IL_4V9F_033

Geometric discrepancy: 0.1187

The information below is about IL_4V9F_033

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8HL2|1|A23S|G|995
8HL2|1|A23S|G|996
8HL2|1|A23S|U|997
8HL2|1|A23S|A|998
8HL2|1|A23S|G|999
*
8HL2|1|A23S|C|1051
8HL2|1|A23S|G|1052
8HL2|1|A23S|A|1053
8HL2|1|A23S|A|1054
8HL2|1|A23S|C|1055

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain L10E

50S ribosomal protein L10e

Chain L18P

50S ribosomal protein L18

Chain L21E

50S ribosomal protein L21e