IL_8HL2_107
3D structure
- PDB id
- 8HL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GCG*CC
- Length
- 5 nucleotides
- Bulged bases
- 8HL2|1|A23S|C|1173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HL2_107 not in the Motif Atlas
- Geometric match to IL_8C3A_152
- Geometric discrepancy: 0.3245
- The information below is about IL_8C3A_152
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
8HL2|1|A23S|G|1172
8HL2|1|A23S|C|1173
8HL2|1|A23S|G|1174
*
8HL2|1|A23S|C|1261
8HL2|1|A23S|C|1262
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL6P
- 50S ribosomal protein L6
- Chain ALX0
- 50S ribosomal protein L18Ae
- Chain L10E
- 50S ribosomal protein L10e
- Chain L40E
- 50S ribosomal protein L40E
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