IL_8HL2_108

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUUAGACAG*CCGAG

Length

14 nucleotides

Bulged bases

8HL2|1|A23S|A|1186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_108 not in the Motif Atlas

Homologous match to IL_4V9F_042

Geometric discrepancy: 0.211

The information below is about IL_4V9F_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8HL2|1|A23S|C|1183
8HL2|1|A23S|U|1184
8HL2|1|A23S|U|1185
8HL2|1|A23S|A|1186
8HL2|1|A23S|G|1187
8HL2|1|A23S|A|1188
8HL2|1|A23S|C|1189
8HL2|1|A23S|A|1190
8HL2|1|A23S|G|1191
*
8HL2|1|A23S|C|1248
8HL2|1|A23S|C|1249
8HL2|1|A23S|G|1250
8HL2|1|A23S|A|1251
8HL2|1|A23S|G|1252

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL6P

50S ribosomal protein L6

Chain ALX0

50S ribosomal protein L18Ae