IL_8HL2_111

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8HL2|1|A23S|A|1228

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_111 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2948

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8HL2|1|A23S|G|1227
8HL2|1|A23S|A|1228
8HL2|1|A23S|G|1229
8HL2|1|A23S|U|1230
8HL2|1|A23S|G|1231
*
8HL2|1|A23S|C|1240
8HL2|1|A23S|U|1241
8HL2|1|A23S|C|1242

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L40E

50S ribosomal protein L40E