IL_8HL2_121

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUAG*UGAUC

Length

9 nucleotides

Bulged bases

8HL2|1|A23S|U|1709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_121 not in the Motif Atlas

Geometric match to IL_7RQB_057

Geometric discrepancy: 0.2209

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8HL2|1|A23S|G|1598
8HL2|1|A23S|U|1599
8HL2|1|A23S|A|1600
8HL2|1|A23S|G|1601
*
8HL2|1|A23S|U|1706
8HL2|1|A23S|G|1707
8HL2|1|A23S|A|1708
8HL2|1|A23S|U|1709
8HL2|1|A23S|C|1710

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L34E

50S ribosomal protein L34e